J4_9E6Q_008
3D structure
- PDB id
- 9E6Q (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 1.95 Å
Loop
- Sequence
- CU(OMG)*CG*CUUAAGGUAG*(OMU)GAAUG
- Length
- 21 nucleotides
- Bulged bases
- 9E6Q|1|1|U|2047, 9E6Q|1|1|U|2092
- QA status
- Modified nucleotides: OMG, OMU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9E6Q_008 not in the Motif Atlas
- Homologous match to J4_4V9F_008
- Geometric discrepancy: 0.2134
- The information below is about J4_4V9F_008
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_93343.1
- Basepair signature
- cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F
- Number of instances in this motif group
- 4
Unit IDs
9E6Q|1|1|C|1969
9E6Q|1|1|U|1970
9E6Q|1|1|OMG|1971
*
9E6Q|1|1|C|2026
9E6Q|1|1|G|2027
*
9E6Q|1|1|C|2045
9E6Q|1|1|U|2046
9E6Q|1|1|U|2047
9E6Q|1|1|A|2048
9E6Q|1|1|A|2049
9E6Q|1|1|G|2050
9E6Q|1|1|G|2051
9E6Q|1|1|U|2052
9E6Q|1|1|A|2053
9E6Q|1|1|G|2054
*
9E6Q|1|1|OMU|2088
9E6Q|1|1|G|2089
9E6Q|1|1|A|2090
9E6Q|1|1|A|2091
9E6Q|1|1|U|2092
9E6Q|1|1|G|2093
Current chains
- Chain 1
- 23S rRNA
Nearby chains
- Chain 3
- Putative signal-transduction protein with CBS domains
- Chain AA
- Large ribosomal subunit protein uL2
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