J4_9E6Q_009

3D structure

PDB id

9E6Q (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the Pyrobaculum calidifontis 50S ribosomal subunit in complex with Dri

Experimental method

ELECTRON MICROSCOPY

Resolution

1.95 Å

Loop

Sequence

CAAAG*CUGAC*GGC*GGG

Length

16 nucleotides

Bulged bases

9E6Q|1|1|A|2400

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9E6Q_009 not in the Motif Atlas

Homologous match to J4_4V9F_009

Geometric discrepancy: 0.2184

The information below is about J4_4V9F_009

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

9E6Q|1|1|C|2397
9E6Q|1|1|A|2398
9E6Q|1|1|A|2399
9E6Q|1|1|A|2400
9E6Q|1|1|G|2401
*
9E6Q|1|1|C|2455
9E6Q|1|1|U|2456
9E6Q|1|1|G|2457
9E6Q|1|1|A|2458
9E6Q|1|1|C|2459
*
9E6Q|1|1|G|2485
9E6Q|1|1|G|2486
9E6Q|1|1|C|2487
*
9E6Q|1|1|G|2496
9E6Q|1|1|G|2497
9E6Q|1|1|G|2498

Current chains

Chain 1

23S rRNA

Nearby chains

Chain AS

Large ribosomal subunit protein eL21

Chain Ah

eL42