J4_9EBB_008

3D structure

PDB id

9EBB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the MPY and ribosome-tunnel occluding hibernation factors bound to the Mycobacterium tuberculosis C- 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

CAAAG*UUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

9EBB|1|I|A|2526

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9EBB_008 not in the Motif Atlas

Homologous match to J4_8B0X_013

Geometric discrepancy: 0.1509

The information below is about J4_8B0X_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

9EBB|1|I|C|2523
9EBB|1|I|A|2524
9EBB|1|I|A|2525
9EBB|1|I|A|2526
9EBB|1|I|G|2527
*
9EBB|1|I|U|2581
9EBB|1|I|U|2582
9EBB|1|I|G|2583
9EBB|1|I|A|2584
9EBB|1|I|C|2585
*
9EBB|1|I|G|2608
9EBB|1|I|G|2609
9EBB|1|I|G|2610
*
9EBB|1|I|C|2619
9EBB|1|I|G|2620
9EBB|1|I|G|2621

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain O

50S ribosomal protein L18

Chain W

50S ribosomal protein L27

Chain b

Large ribosomal subunit protein bL33