J4_9EBV_002
3D structure
- PDB id
- 9EBV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Bacillus subtilis yjdF riboswitch aptamer domain in complex with lumichrome
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.519 Å
Loop
- Sequence
- AAAAAACACGA*UG*UCAGUAACC*GUCCAU
- Length
- 28 nucleotides
- Bulged bases
- 9EBV|1|M|U|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9EBV_002 not in the Motif Atlas
- Homologous match to J4_9EBV_001
- Geometric discrepancy: 0.1672
- The information below is about J4_9EBV_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_93067.1
- Basepair signature
- cWW-F-F-F-F-F-F-F-cWW-F-cWW-tWW-cSW-F-F-F-F-cWW-cWW-F
- Number of instances in this motif group
- 1
Unit IDs
9EBV|1|M|A|6
9EBV|1|M|A|7
9EBV|1|M|A|8
9EBV|1|M|A|9
9EBV|1|M|A|10
9EBV|1|M|A|11
9EBV|1|M|C|12
9EBV|1|M|A|13
9EBV|1|M|C|14
9EBV|1|M|G|15
9EBV|1|M|A|16
*
9EBV|1|M|U|35
9EBV|1|M|G|36
*
9EBV|1|M|U|45
9EBV|1|M|C|46
9EBV|1|M|A|47
9EBV|1|M|G|48
9EBV|1|M|U|49
9EBV|1|M|A|50
9EBV|1|M|A|51
9EBV|1|M|C|52
9EBV|1|M|C|53
*
9EBV|1|M|G|70
9EBV|1|M|U|71
9EBV|1|M|C|72
9EBV|1|M|C|73
9EBV|1|M|A|74
9EBV|1|M|U|75
Current chains
- Chain M
- RNA (81-MER)
Nearby chains
- Chain A
- azaaromatic riboswitch aptamer (yjdF RNA)
Coloring options: