J4_9EC3_002

3D structure

PDB id

9EC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

CGACAAG*CC*GUAC*GG

Length

15 nucleotides

Bulged bases

9EC3|1|I|G|1402, 9EC3|1|I|A|1403, 9EC3|1|I|C|1404, 9EC3|1|I|A|1405, 9EC3|1|I|A|1406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9EC3_002 not in the Motif Atlas

Homologous match to J4_7A0S_004

Geometric discrepancy: 0.4328

The information below is about J4_7A0S_004

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_19484.1

Basepair signature

cWW-F-cWW-F-tSS-F-cWW-F-cWW

Number of instances in this motif group

8

Unit IDs

9EC3|1|I|C|1401
9EC3|1|I|G|1402
9EC3|1|I|A|1403
9EC3|1|I|C|1404
9EC3|1|I|A|1405
9EC3|1|I|A|1406
9EC3|1|I|G|1407
*
9EC3|1|I|C|1425
9EC3|1|I|C|1426
*
9EC3|1|I|G|1880
9EC3|1|I|U|1881
9EC3|1|I|A|1882
9EC3|1|I|C|1883
*
9EC3|1|I|G|2247
9EC3|1|I|G|2248

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 0

50S ribosomal protein L32

Chain N

50S ribosomal protein L17

Chain S

50S ribosomal protein L22