J4_9EC3_007

3D structure

PDB id

9EC3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the ribosome-tunnel occluding hibernation factor bound to the Mycobacterium tuberculosis C- 70S ribosome carrying fMet-tRNA(fMet) and deacylated tRNA at ribosome P and E sites.

Experimental method

ELECTRON MICROSCOPY

Resolution

3.29 Å

Loop

Sequence

CAAAG*UUGAC*GGG*CGG

Length

16 nucleotides

Bulged bases

9EC3|1|I|A|2526

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9EC3_007 not in the Motif Atlas

Homologous match to J4_8B0X_013

Geometric discrepancy: 0.1729

The information below is about J4_8B0X_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_98139.1

Basepair signature

cWW-F-cWW-tWW-tHH-cWW-cHW-cWW

Number of instances in this motif group

6

Unit IDs

9EC3|1|I|C|2523
9EC3|1|I|A|2524
9EC3|1|I|A|2525
9EC3|1|I|A|2526
9EC3|1|I|G|2527
*
9EC3|1|I|U|2581
9EC3|1|I|U|2582
9EC3|1|I|G|2583
9EC3|1|I|A|2584
9EC3|1|I|C|2585
*
9EC3|1|I|G|2608
9EC3|1|I|G|2609
9EC3|1|I|G|2610
*
9EC3|1|I|C|2619
9EC3|1|I|G|2620
9EC3|1|I|G|2621

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain 3

50S ribosomal protein L35

Chain O

50S ribosomal protein L18

Chain W

50S ribosomal protein L27

Chain b

Large ribosomal subunit protein bL33