J4_9ED0_001

3D structure

PDB id

9ED0 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human LARP1 bound to the 40S small ribosomal subunit

Experimental method

ELECTRON MICROSCOPY

Resolution

2.8 Å

Loop

Sequence

C(A2M)UUAAA(PSU)C*GCC*G(PSU)GAC*GG

Length

19 nucleotides

Bulged bases

9ED0|1|2|G|407

QA status

Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9ED0|1|2|C|98
9ED0|1|2|A2M|99
9ED0|1|2|U|100
9ED0|1|2|U|101
9ED0|1|2|A|102
9ED0|1|2|A|103
9ED0|1|2|A|104
9ED0|1|2|PSU|105
9ED0|1|2|C|106
*
9ED0|1|2|G|355
9ED0|1|2|C|356
9ED0|1|2|C|357
*
9ED0|1|2|G|405
9ED0|1|2|PSU|406
9ED0|1|2|G|407
9ED0|1|2|A|408
9ED0|1|2|C|409
*
9ED0|1|2|G|431
9ED0|1|2|G|432

Current chains

Chain 2

rRNA

Nearby chains

Chain E

Small ribosomal subunit protein eS4, X isoform

Chain I

Small ribosomal subunit protein eS8

Chain L

Small ribosomal subunit protein uS17

Chain X

40S ribosomal protein S23