J4_9ED0_002
3D structure
- PDB id
- 9ED0 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human LARP1 bound to the 40S small ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.8 Å
Loop
- Sequence
- AAG*CGAAAG*CCA(PSU)AAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 9ED0|1|2|A|672, 9ED0|1|2|A|1083, 9ED0|1|2|C|1085, 9ED0|1|2|A|1087
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9ED0|1|2|A|671
9ED0|1|2|A|672
9ED0|1|2|G|673
*
9ED0|1|2|C|1032
9ED0|1|2|G|1033
9ED0|1|2|A|1034
9ED0|1|2|A|1035
9ED0|1|2|A|1036
9ED0|1|2|G|1037
*
9ED0|1|2|C|1078
9ED0|1|2|C|1079
9ED0|1|2|A|1080
9ED0|1|2|PSU|1081
9ED0|1|2|A|1082
9ED0|1|2|A|1083
9ED0|1|2|A|1084
9ED0|1|2|C|1085
9ED0|1|2|G|1086
9ED0|1|2|A|1087
9ED0|1|2|U|1088
9ED0|1|2|G|1089
*
9ED0|1|2|U|1160
9ED0|1|2|U|1161
Current chains
- Chain 2
- rRNA
Nearby chains
- Chain L
- Small ribosomal subunit protein uS17
- Chain N
- Small ribosomal subunit protein uS15
- Chain O
- Small ribosomal subunit protein uS11
- Chain W
- Small ribosomal subunit protein uS8
- Chain X
- 40S ribosomal protein S23
- Chain a
- Small ribosomal subunit protein eS26
- Chain n
- Small ribosomal subunit protein eS32
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