J4_9EHO_004
3D structure
- PDB id
- 9EHO (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Octopus ribosome, hybrid 80S
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGUUC*GGUCAG*CC*GUCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 9EHO|1|5|C|2194
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9EHO_004 not in the Motif Atlas
- Homologous match to J4_9PN5_004
- Geometric discrepancy: 0.067
- The information below is about J4_9PN5_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_17758.1
- Basepair signature
- cWW-F-cHW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
9EHO|1|5|G|2163
9EHO|1|5|G|2164
9EHO|1|5|U|2165
9EHO|1|5|U|2166
9EHO|1|5|C|2167
*
9EHO|1|5|G|2191
9EHO|1|5|G|2192
9EHO|1|5|U|2193
9EHO|1|5|C|2194
9EHO|1|5|A|2195
9EHO|1|5|G|2196
*
9EHO|1|5|C|2331
9EHO|1|5|C|2332
*
9EHO|1|5|G|2628
9EHO|1|5|U|2629
9EHO|1|5|C|2630
9EHO|1|5|C|2631
9EHO|1|5|G|2632
9EHO|1|5|U|2633
9EHO|1|5|A|2634
9EHO|1|5|C|2635
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain R
- Ribosomal protein L19
- Chain X
- Large ribosomal subunit protein uL23 N-terminal domain-containing protein
- Chain g
- Large ribosomal subunit protein eL34
- Chain j
- Ribosomal protein L37
- Chain k
- eL38
- Chain l
- Large ribosomal subunit protein eL39
Coloring options: