J4_9F1D_001
3D structure
- PDB id
- 9F1D (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Mammalian quaternary complex of a translating 80S ribosome, NAC, MetAP1 and NatA/E-HYPK
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.26 Å
Loop
- Sequence
- C(A2M)UUAAA(PSU)C*GCC*G(PSU)GAC*GG
- Length
- 19 nucleotides
- Bulged bases
- 9F1D|1|A2|G|408
- QA status
- Modified nucleotides: A2M, PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9F1D_001 not in the Motif Atlas
- Homologous match to J4_8P9A_021
- Geometric discrepancy: 0.1297
- The information below is about J4_8P9A_021
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_15241.2
- Basepair signature
- cWW-cSH-tHS-cWW-F-F-tHW-F-cWW-tHW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
9F1D|1|A2|C|98
9F1D|1|A2|A2M|99
9F1D|1|A2|U|100
9F1D|1|A2|U|101
9F1D|1|A2|A|102
9F1D|1|A2|A|103
9F1D|1|A2|A|104
9F1D|1|A2|PSU|105
9F1D|1|A2|C|106
*
9F1D|1|A2|G|356
9F1D|1|A2|C|357
9F1D|1|A2|C|358
*
9F1D|1|A2|G|406
9F1D|1|A2|PSU|407
9F1D|1|A2|G|408
9F1D|1|A2|A|409
9F1D|1|A2|C|410
*
9F1D|1|A2|G|432
9F1D|1|A2|G|433
Current chains
- Chain A2
- 18S rRNA
Nearby chains
- Chain Ad
- 40S ribosomal protein S4
- Chain Ah
- 40S ribosomal protein S8
- Chain Ak
- 40S ribosomal protein S11
- Chain Aw
- 40S ribosomal protein S23
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