J4_9F58_001
3D structure
- PDB id
- 9F58 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Gcn2 dimer bound to the 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- UC*GAGUCG*CUAAGUG*UAAA
- Length
- 19 nucleotides
- Bulged bases
- 9F58|1|a|U|298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9F58_001 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.0721
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.1
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
9F58|1|a|U|112
9F58|1|a|C|113
*
9F58|1|a|G|267
9F58|1|a|A|268
9F58|1|a|G|269
9F58|1|a|U|270
9F58|1|a|C|271
9F58|1|a|G|272
*
9F58|1|a|C|293
9F58|1|a|U|294
9F58|1|a|A|295
9F58|1|a|A|296
9F58|1|a|G|297
9F58|1|a|U|298
9F58|1|a|G|299
*
9F58|1|a|U|316
9F58|1|a|A|317
9F58|1|a|A|318
9F58|1|a|A|319
Current chains
- Chain a
- 25S rRNA
Nearby chains
- Chain T
- 60S ribosomal protein L35-A
- Chain U
- 60S ribosomal protein L36-A
- Chain m
- 60S ribosomal protein L13-A
- Chain o
- 60S ribosomal protein L15-A
Coloring options: