J4_9F58_003
3D structure
- PDB id
- 9F58 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Gcn2 dimer bound to the 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- CAAAUAU*AG*UGAU*AG
- Length
- 15 nucleotides
- Bulged bases
- 9F58|1|a|A|1452, 9F58|1|a|U|1455
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9F58_003 not in the Motif Atlas
- Homologous match to J4_8P9A_014
- Geometric discrepancy: 0.0678
- The information below is about J4_8P9A_014
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_34212.1
- Basepair signature
- cWW-F-cWW-F-F-F-cWW-F-cWW
- Number of instances in this motif group
- 3
Unit IDs
9F58|1|a|C|1451
9F58|1|a|A|1452
9F58|1|a|A|1453
9F58|1|a|A|1454
9F58|1|a|U|1455
9F58|1|a|A|1456
9F58|1|a|U|1457
*
9F58|1|a|A|1475
9F58|1|a|G|1476
*
9F58|1|a|U|1877
9F58|1|a|G|1878
9F58|1|a|A|1879
9F58|1|a|U|1880
*
9F58|1|a|A|2352
9F58|1|a|G|2353
Current chains
- Chain a
- 25S rRNA
Nearby chains
- Chain O
- 60S ribosomal protein L31-A
- Chain q
- 60S ribosomal protein L17-A
- Chain s
- 60S ribosomal protein L19-A
Coloring options: