J4_9F58_006
3D structure
- PDB id
- 9F58 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Gcn2 dimer bound to the 60S ribosomal subunit
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GACUG*CAUAG*UGAUU*AUUAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9F58_006 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.053
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.1
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
9F58|1|a|G|2130
9F58|1|a|A|2131
9F58|1|a|C|2132
9F58|1|a|U|2133
9F58|1|a|G|2134
*
9F58|1|a|C|2146
9F58|1|a|A|2147
9F58|1|a|U|2148
9F58|1|a|A|2149
9F58|1|a|G|2150
*
9F58|1|a|U|2186
9F58|1|a|G|2187
9F58|1|a|A|2188
9F58|1|a|U|2189
9F58|1|a|U|2190
*
9F58|1|a|A|2317
9F58|1|a|U|2318
9F58|1|a|U|2319
9F58|1|a|A|2320
9F58|1|a|A|2321
9F58|1|a|C|2322
Current chains
- Chain a
- 25S rRNA
Nearby chains
- Chain 0
- 60S ribosomal protein L43-A
- Chain A
- eIF-2-alpha kinase GCN2
- Chain c
- 60S ribosomal protein L2-A
Coloring options: