J4_9F9S_002
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UUAG*CGC*GAGGUCC*GA
- Length
- 16 nucleotides
- Bulged bases
- 9F9S|1|DP|U|8, 9F9S|1|DP|U|47, 9F9S|1|DP|C|48
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9F9S_002 not in the Motif Atlas
- Homologous match to J4_3WQY_001
- Geometric discrepancy: 0.2568
- The information below is about J4_3WQY_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_95067.1
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 48
Unit IDs
9F9S|1|DP|U|7
9F9S|1|DP|U|8
9F9S|1|DP|A|9
9F9S|1|DP|G|10
*
9F9S|1|DP|C|25
9F9S|1|DP|G|26
9F9S|1|DP|C|27
*
9F9S|1|DP|G|43
9F9S|1|DP|A|44
9F9S|1|DP|G|45
9F9S|1|DP|G|46
9F9S|1|DP|U|47
9F9S|1|DP|C|48
9F9S|1|DP|C|49
*
9F9S|1|DP|G|65
9F9S|1|DP|A|66
Current chains
- Chain DP
- tRNA
Nearby chains
- Chain M1
- Large subunit ribosomal RNA; LSU rRNA
- Chain ME
- 60S ribosomal protein L10
- Chain R1
- Small subunit ribosomal RNA; SSU rRNA
- Chain Rp
- 40S ribosomal protein S15
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