J4_9F9S_008

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

GG*CU*AG*UC

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9F9S_008 not in the Motif Atlas

Homologous match to J4_8C3A_005

Geometric discrepancy: 0.0738

The information below is about J4_8C3A_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9F9S|1|L1|G|1674
9F9S|1|L1|G|1675
*
9F9S|1|L1|C|1693
9F9S|1|L1|U|1694
*
9F9S|1|L1|A|1752
9F9S|1|L1|G|1753
*
9F9S|1|L1|U|1772
9F9S|1|L1|C|1773

Current chains

Chain L1

Saccharomyces cerevisiae S288C 25S ribosomal RNA (RDN25-1)

Nearby chains

Chain Lg

60S ribosomal protein L38

Chain Lk

60S ribosomal protein L34-A

Chain Lv

60S ribosomal protein L22-A