J4_9F9S_013
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- UC*GAGUCG*CUAAGUG*UAAA
- Length
- 19 nucleotides
- Bulged bases
- 9F9S|1|M1|U|298
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9F9S_013 not in the Motif Atlas
- Homologous match to J4_8P9A_012
- Geometric discrepancy: 0.0857
- The information below is about J4_8P9A_012
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_94698.1
- Basepair signature
- cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW
- Number of instances in this motif group
- 10
Unit IDs
9F9S|1|M1|U|112
9F9S|1|M1|C|113
*
9F9S|1|M1|G|267
9F9S|1|M1|A|268
9F9S|1|M1|G|269
9F9S|1|M1|U|270
9F9S|1|M1|C|271
9F9S|1|M1|G|272
*
9F9S|1|M1|C|293
9F9S|1|M1|U|294
9F9S|1|M1|A|295
9F9S|1|M1|A|296
9F9S|1|M1|G|297
9F9S|1|M1|U|298
9F9S|1|M1|G|299
*
9F9S|1|M1|U|316
9F9S|1|M1|A|317
9F9S|1|M1|A|318
9F9S|1|M1|A|319
Current chains
- Chain M1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications
Nearby chains
- Chain MG
- 60S ribosomal protein L13-A
- Chain MI
- 60S ribosomal protein L15-A
- Chain Mi
- 60S ribosomal protein L36-A
- Chain Mj
- 60S ribosomal protein L35-A
Coloring options: