J4_9F9S_014

3D structure

PDB id

9F9S (explore in PDB, NAKB, or RNA 3D Hub)

Description

Yeast SDD1 Disome with Mbf1

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUAUG*CGUC*GAG*CGUGUG

Length

18 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9F9S_014 not in the Motif Atlas

Homologous match to J4_8P9A_013

Geometric discrepancy: 0.1047

The information below is about J4_8P9A_013

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_43318.1

Basepair signature

cWW-cWW-F-F-cSS-F-cWW-tHS-cWW-F-cWW

Number of instances in this motif group

2

Unit IDs

9F9S|1|M1|C|185
9F9S|1|M1|U|186
9F9S|1|M1|A|187
9F9S|1|M1|U|188
9F9S|1|M1|G|189
*
9F9S|1|M1|C|205
9F9S|1|M1|G|206
9F9S|1|M1|U|207
9F9S|1|M1|C|208
*
9F9S|1|M1|G|212
9F9S|1|M1|A|213
9F9S|1|M1|G|214
*
9F9S|1|M1|C|226
9F9S|1|M1|G|227
9F9S|1|M1|U|228
9F9S|1|M1|G|229
9F9S|1|M1|U|230
9F9S|1|M1|G|231

Current chains

Chain M1

Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications

Nearby chains

Chain M2

5.8S ribosomal RNA; 5.8S rRNA

Chain Ms

60S ribosomal protein L26-A

Chain My

60S ribosomal protein L4-A