J4_9F9S_016
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GGUUC*GGUUAG*CC*GGUCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 9F9S|1|M1|U|1523
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9F9S_016 not in the Motif Atlas
- Homologous match to J4_8P9A_015
- Geometric discrepancy: 0.0487
- The information below is about J4_8P9A_015
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_47264.1
- Basepair signature
- cWW-F-cHW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW
- Number of instances in this motif group
- 2
Unit IDs
9F9S|1|M1|G|1492
9F9S|1|M1|G|1493
9F9S|1|M1|U|1494
9F9S|1|M1|U|1495
9F9S|1|M1|C|1496
*
9F9S|1|M1|G|1520
9F9S|1|M1|G|1521
9F9S|1|M1|U|1522
9F9S|1|M1|U|1523
9F9S|1|M1|A|1524
9F9S|1|M1|G|1525
*
9F9S|1|M1|C|1614
9F9S|1|M1|C|1615
*
9F9S|1|M1|G|1829
9F9S|1|M1|G|1830
9F9S|1|M1|U|1831
9F9S|1|M1|C|1832
9F9S|1|M1|G|1833
9F9S|1|M1|U|1834
9F9S|1|M1|A|1835
9F9S|1|M1|C|1836
Current chains
- Chain M1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications
Nearby chains
- Chain M2
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain MM
- 60S ribosomal protein L19-A
- Chain Mf
- 60S ribosomal protein L39
- Chain Mg
- 60S ribosomal protein L38
- Chain Mh
- 60S ribosomal protein L37-A
- Chain Mk
- 60S ribosomal protein L34-A
- Chain Mt
- 60S ribosomal protein L25
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