J4_9F9S_018
3D structure
- PDB id
- 9F9S (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Yeast SDD1 Disome with Mbf1
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.9 Å
Loop
- Sequence
- GACUG*CAUAG*UGAUU*AUUAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9F9S_018 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.0579
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.1
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
9F9S|1|M1|G|2130
9F9S|1|M1|A|2131
9F9S|1|M1|C|2132
9F9S|1|M1|U|2133
9F9S|1|M1|G|2134
*
9F9S|1|M1|C|2146
9F9S|1|M1|A|2147
9F9S|1|M1|U|2148
9F9S|1|M1|A|2149
9F9S|1|M1|G|2150
*
9F9S|1|M1|U|2186
9F9S|1|M1|G|2187
9F9S|1|M1|A|2188
9F9S|1|M1|U|2189
9F9S|1|M1|U|2190
*
9F9S|1|M1|A|2317
9F9S|1|M1|U|2318
9F9S|1|M1|U|2319
9F9S|1|M1|A|2320
9F9S|1|M1|A|2321
9F9S|1|M1|C|2322
Current chains
- Chain M1
- Saccharomyces cerevisiae S288C 18S ribosomal RNA (RDN18-1) with modifications
Nearby chains
- Chain Mb
- 60S ribosomal protein L43-A
- Chain Md
- 60S ribosomal protein L41-A
- Chain Mw
- 60S ribosomal protein L2-A
- Chain R1
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: