J4_9FBV_012

3D structure

PDB id

9FBV (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S Escherichia coli ribosome with P-site initiatior tRNA.

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9FBV_012 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0395

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9FBV|1|a|A|1772
9FBV|1|a|A|1773
9FBV|1|a|C|1774
9FBV|1|a|U|1775
9FBV|1|a|G|1776
*
9FBV|1|a|C|1788
9FBV|1|a|A|1789
9FBV|1|a|C|1790
9FBV|1|a|A|1791
9FBV|1|a|G|1792
*
9FBV|1|a|U|1827
9FBV|1|a|G|1828
9FBV|1|a|A|1829
9FBV|1|a|C|1830
*
9FBV|1|a|G|1975
9FBV|1|a|U|1976
9FBV|1|a|A|1977
9FBV|1|a|A|1978
9FBV|1|a|U|1979

Current chains

Chain a

23S ribosomal RNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2