J4_9FIB_001

3D structure

PDB id

9FIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S-IF1-IF3-mRNA-GE81112A complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

9FIB|1|B|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9FIB_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2633

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9FIB|1|B|G|115
9FIB|1|B|A|116
9FIB|1|B|G|117
9FIB|1|B|U|118
9FIB|1|B|A|119
9FIB|1|B|A|120
9FIB|1|B|U|121
9FIB|1|B|G|122
*
9FIB|1|B|U|239
9FIB|1|B|G|240
*
9FIB|1|B|C|286
9FIB|1|B|U|287
9FIB|1|B|A|288
9FIB|1|B|G|289
*
9FIB|1|B|C|311
9FIB|1|B|C|312

Current chains

Chain B

16S rRNA

Nearby chains

Chain P

Small ribosomal subunit protein bS16

Chain Q

Small ribosomal subunit protein uS17