J4_9FIB_002

3D structure

PDB id

9FIB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of 30S-IF1-IF3-mRNA-GE81112A complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.3 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9FIB|1|B|C|183

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9FIB_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.082

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9FIB|1|B|G|142
9FIB|1|B|A|143
9FIB|1|B|G|144
*
9FIB|1|B|C|178
9FIB|1|B|A|179
9FIB|1|B|U|180
9FIB|1|B|A|181
9FIB|1|B|A|182
9FIB|1|B|C|183
9FIB|1|B|G|184
*
9FIB|1|B|C|193
9FIB|1|B|C|194
9FIB|1|B|A|195
9FIB|1|B|A|196
9FIB|1|B|A|197
9FIB|1|B|G|198
*
9FIB|1|B|U|219
9FIB|1|B|G|220
9FIB|1|B|C|221

Current chains

Chain B

16S rRNA

Nearby chains

Chain T

Small ribosomal subunit protein bS20