J4_9G6J_012
3D structure
- PDB id
- 9G6J (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.15 Å
Loop
- Sequence
- GUGG*CGU*AAGGUCG*CC
- Length
- 16 nucleotides
- Bulged bases
- 9G6J|1|AT|U|48, 9G6J|1|AT|C|49
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9G6J_012 not in the Motif Atlas
- Homologous match to J4_1IL2_001
- Geometric discrepancy: 0.217
- The information below is about J4_1IL2_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.29
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 54
Unit IDs
9G6J|1|AT|G|7
9G6J|1|AT|U|8
9G6J|1|AT|G|9
9G6J|1|AT|G|10
*
9G6J|1|AT|C|26
9G6J|1|AT|G|27
9G6J|1|AT|U|28
*
9G6J|1|AT|A|44
9G6J|1|AT|A|45
9G6J|1|AT|G|46
9G6J|1|AT|G|47
9G6J|1|AT|U|48
9G6J|1|AT|C|49
9G6J|1|AT|G|50
*
9G6J|1|AT|C|66
9G6J|1|AT|C|67
Current chains
- Chain AT
- tRNA-fMet
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: