3D structure

PDB id
9G6J (explore in PDB, NAKB, or RNA 3D Hub)
Description
The structure of the Candida albicans ribosome with tRNA-fMet, mRNA, and compounds (GEN and MFQ) with strong density for the P-site tRNA
Experimental method
ELECTRON MICROSCOPY
Resolution
2.15 Å

Loop

Sequence
GUGG*CGU*AAGGUCG*CC
Length
16 nucleotides
Bulged bases
9G6J|1|AT|U|48, 9G6J|1|AT|C|49
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_9G6J_012 not in the Motif Atlas
Homologous match to J4_1IL2_001
Geometric discrepancy: 0.217
The information below is about J4_1IL2_001
Detailed Annotation
tRNA junction
Broad Annotation
No text annotation
Motif group
J4_70449.29
Basepair signature
cWW-F-cWW-cWW-cHS-F-cWW-cWW
Number of instances in this motif group
54

Unit IDs

9G6J|1|AT|G|7
9G6J|1|AT|U|8
9G6J|1|AT|G|9
9G6J|1|AT|G|10
*
9G6J|1|AT|C|26
9G6J|1|AT|G|27
9G6J|1|AT|U|28
*
9G6J|1|AT|A|44
9G6J|1|AT|A|45
9G6J|1|AT|G|46
9G6J|1|AT|G|47
9G6J|1|AT|U|48
9G6J|1|AT|C|49
9G6J|1|AT|G|50
*
9G6J|1|AT|C|66
9G6J|1|AT|C|67

Current chains

Chain AT
tRNA-fMet

Nearby chains

Chain 1
Large subunit ribosomal RNA; LSU rRNA

Coloring options:


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