J4_9G8M_005
3D structure
- PDB id
- 9G8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome bound by a SKI2-exosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GGUUC*GGUCAG*UC*GGCCGUAC
- Length
- 21 nucleotides
- Bulged bases
- 9G8M|1|L5|C|2435
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9G8M_005 not in the Motif Atlas
- Homologous match to J4_8C3A_004
- Geometric discrepancy: 0.1511
- The information below is about J4_8C3A_004
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
9G8M|1|L5|G|2404
9G8M|1|L5|G|2405
9G8M|1|L5|U|2406
9G8M|1|L5|U|2407
9G8M|1|L5|C|2408
*
9G8M|1|L5|G|2432
9G8M|1|L5|G|2433
9G8M|1|L5|U|2434
9G8M|1|L5|C|2435
9G8M|1|L5|A|2436
9G8M|1|L5|G|2437
*
9G8M|1|L5|U|2536
9G8M|1|L5|C|2537
*
9G8M|1|L5|G|2775
9G8M|1|L5|G|2776
9G8M|1|L5|C|2777
9G8M|1|L5|C|2778
9G8M|1|L5|G|2779
9G8M|1|L5|U|2780
9G8M|1|L5|A|2781
9G8M|1|L5|C|2782
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain L8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain LX
- 60S ribosomal protein L23a
- Chain Lg
- 60S ribosomal protein L34
- Chain Lj
- 60S ribosomal protein L37
- Chain Lk
- 60S ribosomal protein L38
- Chain Ll
- 60S ribosomal protein L39
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