J4_9G8M_007
3D structure
- PDB id
- 9G8M (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 80S ribosome bound by a SKI2-exosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- GACUG*CAAAG*UGAUU*AUGAAC
- Length
- 21 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9G8M_007 not in the Motif Atlas
- Homologous match to J4_8P9A_017
- Geometric discrepancy: 0.1182
- The information below is about J4_8P9A_017
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_78485.1
- Basepair signature
- cWW-tSW-F-F-tHS-F-cWW-F-cWW-F-F-tHS-F-cWW
- Number of instances in this motif group
- 6
Unit IDs
9G8M|1|L5|G|3632
9G8M|1|L5|A|3633
9G8M|1|L5|C|3634
9G8M|1|L5|U|3635
9G8M|1|L5|G|3636
*
9G8M|1|L5|C|3648
9G8M|1|L5|A|3649
9G8M|1|L5|A|3650
9G8M|1|L5|A|3651
9G8M|1|L5|G|3652
*
9G8M|1|L5|U|3688
9G8M|1|L5|G|3689
9G8M|1|L5|A|3690
9G8M|1|L5|U|3691
9G8M|1|L5|U|3692
*
9G8M|1|L5|A|3819
9G8M|1|L5|U|3820
9G8M|1|L5|G|3821
9G8M|1|L5|A|3822
9G8M|1|L5|A|3823
9G8M|1|L5|C|3824
Current chains
- Chain L5
- 28S ribosomal RNA
Nearby chains
- Chain LA
- 60S ribosomal protein L8
- Chain Ln
- 60S ribosomal protein L41
- Chain Lp
- 60S ribosomal protein L37a
- Chain S2
- Small subunit ribosomal RNA; SSU rRNA
Coloring options: