J4_9G8M_009

3D structure

PDB id

9G8M (explore in PDB, NAKB, or RNA 3D Hub)

Description

human 80S ribosome bound by a SKI2-exosome complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAA*UC*GUG*CGCC

Length

13 nucleotides

Bulged bases

9G8M|1|L5|U|4675

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9G8M|1|L5|G|4585
9G8M|1|L5|U|4586
9G8M|1|L5|A|4587
9G8M|1|L5|A|4588
*
9G8M|1|L5|U|4618
9G8M|1|L5|C|4619
*
9G8M|1|L5|G|4674
9G8M|1|L5|U|4675
9G8M|1|L5|G|4676
*
9G8M|1|L5|C|4710
9G8M|1|L5|G|4711
9G8M|1|L5|C|4712
9G8M|1|L5|C|4713

Current chains

Chain L5

28S ribosomal RNA

Nearby chains

Chain LB

60S ribosomal protein L3

Chain LO

60S ribosomal protein L13a

Chain LV

60S ribosomal protein L23