J4_9G8O_002
3D structure
- PDB id
- 9G8O (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human 40S ribosome bound by a SKI238-exosome complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.4 Å
Loop
- Sequence
- AAG*CGAAAG*CCAUAAACGAUG*UU
- Length
- 23 nucleotides
- Bulged bases
- 9G8O|1|S2|A|672, 9G8O|1|S2|A|1083
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9G8O_002 not in the Motif Atlas
- Homologous match to J4_8P9A_022
- Geometric discrepancy: 0.1123
- The information below is about J4_8P9A_022
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_14595.1
- Basepair signature
- cWW-cWW-cWW-F-F-tHW-F-F-F-F-F-cWW-F-F
- Number of instances in this motif group
- 5
Unit IDs
9G8O|1|S2|A|671
9G8O|1|S2|A|672
9G8O|1|S2|G|673
*
9G8O|1|S2|C|1032
9G8O|1|S2|G|1033
9G8O|1|S2|A|1034
9G8O|1|S2|A|1035
9G8O|1|S2|A|1036
9G8O|1|S2|G|1037
*
9G8O|1|S2|C|1078
9G8O|1|S2|C|1079
9G8O|1|S2|A|1080
9G8O|1|S2|U|1081
9G8O|1|S2|A|1082
9G8O|1|S2|A|1083
9G8O|1|S2|A|1084
9G8O|1|S2|C|1085
9G8O|1|S2|G|1086
9G8O|1|S2|A|1087
9G8O|1|S2|U|1088
9G8O|1|S2|G|1089
*
9G8O|1|S2|U|1160
9G8O|1|S2|U|1161
Current chains
- Chain S2
- 18S ribosomal RNA
Nearby chains
- Chain Ln
- 60S ribosomal protein L41
- Chain SL
- 40S ribosomal protein S11
- Chain SN
- 40S ribosomal protein S13
- Chain SO
- 40S ribosomal protein S14
- Chain SW
- 40S ribosomal protein S15a
- Chain SX
- 40S ribosomal protein S23
- Chain Sa
- 40S ribosomal protein S26
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