J4_9GFT_001

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAGUAAUG*UG*CUAG*CC

Length

16 nucleotides

Bulged bases

9GFT|1|0|U|121

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GFT_001 not in the Motif Atlas

Homologous match to J4_5J7L_001

Geometric discrepancy: 0.2758

The information below is about J4_5J7L_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_35578.3

Basepair signature

cWW-F-cWW-F-F-F-tHW-F-cWW-cWW

Number of instances in this motif group

2

Unit IDs

9GFT|1|0|G|115
9GFT|1|0|A|116
9GFT|1|0|G|117
9GFT|1|0|U|118
9GFT|1|0|A|119
9GFT|1|0|A|120
9GFT|1|0|U|121
9GFT|1|0|G|122
*
9GFT|1|0|U|239
9GFT|1|0|G|240
*
9GFT|1|0|C|286
9GFT|1|0|U|287
9GFT|1|0|A|288
9GFT|1|0|G|289
*
9GFT|1|0|C|311
9GFT|1|0|C|312

Current chains

Chain 0

16S ribosomal RNA

Nearby chains

Chain I

Small ribosomal subunit protein bS16

Chain J

Small ribosomal subunit protein uS17