J4_9GFT_002

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAG*CAUAACG*CCAAAG*UGC

Length

19 nucleotides

Bulged bases

9GFT|1|0|C|183, 9GFT|1|0|A|197

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GFT_002 not in the Motif Atlas

Homologous match to J4_5J7L_002

Geometric discrepancy: 0.1703

The information below is about J4_5J7L_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_01665.1

Basepair signature

cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW

Number of instances in this motif group

1

Unit IDs

9GFT|1|0|G|142
9GFT|1|0|A|143
9GFT|1|0|G|144
*
9GFT|1|0|C|178
9GFT|1|0|A|179
9GFT|1|0|U|180
9GFT|1|0|A|181
9GFT|1|0|A|182
9GFT|1|0|C|183
9GFT|1|0|G|184
*
9GFT|1|0|C|193
9GFT|1|0|C|194
9GFT|1|0|A|195
9GFT|1|0|A|196
9GFT|1|0|A|197
9GFT|1|0|G|198
*
9GFT|1|0|U|219
9GFT|1|0|G|220
9GFT|1|0|C|221

Current chains

Chain 0

16S ribosomal RNA

Nearby chains

Chain u

Small ribosomal subunit protein bS20