J4_9GFT_004
3D structure
- PDB id
- 9GFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUAG*CAG*CGUGUCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 9GFT|1|A|U|8, 9GFT|1|A|U|45, 9GFT|1|A|U|47, 9GFT|1|A|C|48
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9GFT_004 not in the Motif Atlas
- Homologous match to J4_3WFS_001
- Geometric discrepancy: 0.3546
- The information below is about J4_3WFS_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_36296.3
- Basepair signature
- cWW-F-cWW-cWW-F-F-F-cWW
- Number of instances in this motif group
- 5
Unit IDs
9GFT|1|A|A|7
9GFT|1|A|U|8
9GFT|1|A|A|9
9GFT|1|A|G|10
*
9GFT|1|A|C|25
9GFT|1|A|A|26
9GFT|1|A|G|27
*
9GFT|1|A|C|43
9GFT|1|A|G|44
9GFT|1|A|U|45
9GFT|1|A|G|46
9GFT|1|A|U|47
9GFT|1|A|C|48
9GFT|1|A|C|49
*
9GFT|1|A|G|65
9GFT|1|A|U|66
Current chains
- Chain A
- A-site tRNA
Nearby chains
- Chain 0
- Small subunit ribosomal RNA; SSU rRNA
- Chain N
- Large subunit ribosomal RNA; LSU rRNA
Coloring options: