J4_9GFT_007
3D structure
- PDB id
- 9GFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GAG*CAUAACG*CCAAAG*UGC
- Length
- 19 nucleotides
- Bulged bases
- 9GFT|1|AA|C|183, 9GFT|1|AA|A|197
- QA status
- Unknown status
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9GFT_007 not in the Motif Atlas
- Homologous match to J4_5J7L_002
- Geometric discrepancy: 0.1095
- The information below is about J4_5J7L_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J4_01665.1
- Basepair signature
- cWW-tWH-F-tWH-cWW-tSS-F-tHW-tSS-cWW-cWW
- Number of instances in this motif group
- 1
Unit IDs
9GFT|1|AA|G|142
9GFT|1|AA|A|143
9GFT|1|AA|G|144
*
9GFT|1|AA|C|178
9GFT|1|AA|A|179
9GFT|1|AA|U|180
9GFT|1|AA|A|181
9GFT|1|AA|A|182
9GFT|1|AA|C|183
9GFT|1|AA|G|184
*
9GFT|1|AA|C|193
9GFT|1|AA|C|194
9GFT|1|AA|A|195
9GFT|1|AA|A|196
9GFT|1|AA|A|197
9GFT|1|AA|G|198
*
9GFT|1|AA|U|219
9GFT|1|AA|G|220
9GFT|1|AA|C|221
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AS
- Small ribosomal subunit protein bS20
Coloring options: