J4_9GFT_010

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CC*GAGUAG*UGAAUAUG*CAAG

Length

20 nucleotides

Bulged bases

9GFT|1|AV|U|405

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GFT_010 not in the Motif Atlas

Homologous match to J4_5J7L_018

Geometric discrepancy: 0.1183

The information below is about J4_5J7L_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_45801.6

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW

Number of instances in this motif group

7

Unit IDs

9GFT|1|AV|C|268
9GFT|1|AV|C|269
*
9GFT|1|AV|G|370
9GFT|1|AV|A|371
9GFT|1|AV|G|372
9GFT|1|AV|U|373
9GFT|1|AV|A|374
9GFT|1|AV|G|375
*
9GFT|1|AV|U|399
9GFT|1|AV|G|400
9GFT|1|AV|A|401
9GFT|1|AV|A|402
9GFT|1|AV|U|403
9GFT|1|AV|A|404
9GFT|1|AV|U|405
9GFT|1|AV|G|406
*
9GFT|1|AV|C|421
9GFT|1|AV|A|422
9GFT|1|AV|A|423
9GFT|1|AV|G|424

Current chains

Chain AV

23S RNA

Nearby chains

Chain Ac

Large ribosomal subunit protein bL9

Chain As

Large ribosomal subunit protein bL28