J4_9GFT_013

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAUAAA*UC*GCUU*AG

Length

15 nucleotides

Bulged bases

9GFT|1|AV|G|1271, 9GFT|1|AV|A|1272, 9GFT|1|AV|U|1273, 9GFT|1|AV|U|1647

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GFT_013 not in the Motif Atlas

Homologous match to J4_5J7L_021

Geometric discrepancy: 0.1256

The information below is about J4_5J7L_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_64571.5

Basepair signature

cWW-F-cWW-tSS-cWW-F-cWW

Number of instances in this motif group

4

Unit IDs

9GFT|1|AV|C|1270
9GFT|1|AV|G|1271
9GFT|1|AV|A|1272
9GFT|1|AV|U|1273
9GFT|1|AV|A|1274
9GFT|1|AV|A|1275
9GFT|1|AV|A|1276
*
9GFT|1|AV|U|1294
9GFT|1|AV|C|1295
*
9GFT|1|AV|G|1645
9GFT|1|AV|C|1646
9GFT|1|AV|U|1647
9GFT|1|AV|U|1648
*
9GFT|1|AV|A|2009
9GFT|1|AV|G|2010

Current chains

Chain AV

23S RNA

Nearby chains

Chain Ai

Large ribosomal subunit protein bL17

Chain An

Large ribosomal subunit protein uL22

Chain Av

Large ribosomal subunit protein bL32