J4_9GFT_015

3D structure

PDB id

9GFT (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the HrpA-bound E. coli disome, Class I

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UC*GGUGAG*CU*AAUCGUA

Length

17 nucleotides

Bulged bases

9GFT|1|AV|G|1341

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GFT_015 not in the Motif Atlas

Homologous match to J4_5J7L_023

Geometric discrepancy: 0.1057

The information below is about J4_5J7L_023

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_10313.5

Basepair signature

cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

5

Unit IDs

9GFT|1|AV|U|1313
9GFT|1|AV|C|1314
*
9GFT|1|AV|G|1338
9GFT|1|AV|G|1339
9GFT|1|AV|U|1340
9GFT|1|AV|G|1341
9GFT|1|AV|A|1342
9GFT|1|AV|G|1343
*
9GFT|1|AV|C|1404
9GFT|1|AV|U|1405
*
9GFT|1|AV|A|1597
9GFT|1|AV|A|1598
9GFT|1|AV|U|1599
9GFT|1|AV|C|1600
9GFT|1|AV|G|1601
9GFT|1|AV|U|1602
9GFT|1|AV|A|1603

Current chains

Chain AV

23S RNA

Nearby chains

Chain Ao

Large ribosomal subunit protein uL23