J4_9GFT_021
3D structure
- PDB id
- 9GFT (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the HrpA-bound E. coli disome, Class I
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- AUCG*CAC*GCAUUCC*GU
- Length
- 16 nucleotides
- Bulged bases
- 9GFT|1|M|U|8, 9GFT|1|M|U|46, 9GFT|1|M|C|47
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J4_9GFT_021 not in the Motif Atlas
- Homologous match to J4_1IL2_001
- Geometric discrepancy: 0.3395
- The information below is about J4_1IL2_001
- Detailed Annotation
- tRNA junction
- Broad Annotation
- No text annotation
- Motif group
- J4_70449.28
- Basepair signature
- cWW-F-cWW-cWW-cHS-F-cWW-cWW
- Number of instances in this motif group
- 55
Unit IDs
9GFT|1|M|A|7
9GFT|1|M|U|8
9GFT|1|M|C|9
9GFT|1|M|G|10
*
9GFT|1|M|C|24
9GFT|1|M|A|25
9GFT|1|M|C|26
*
9GFT|1|M|G|42
9GFT|1|M|C|43
9GFT|1|M|A|44
9GFT|1|M|U|45
9GFT|1|M|U|46
9GFT|1|M|C|47
9GFT|1|M|C|48
*
9GFT|1|M|G|64
9GFT|1|M|U|65
Current chains
- Chain M
- P-site tRNA
Nearby chains
- Chain F
- Small ribosomal subunit protein uS13
- Chain N
- Large subunit ribosomal RNA; LSU rRNA
- Chain Z
- 50S ribosomal protein L16
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