3D structure

PDB id
9GFT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HrpA-bound E. coli disome, Class I
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
UC*GGUGAG*CU*AAUCGUA
Length
17 nucleotides
Bulged bases
9GFT|1|N|G|1341
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_9GFT_027 not in the Motif Atlas
Homologous match to J4_5J7L_023
Geometric discrepancy: 0.0869
The information below is about J4_5J7L_023
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_10313.5
Basepair signature
cWW-cWW-tHW-F-F-F-F-F-F-cWW-cWW
Number of instances in this motif group
5

Unit IDs

9GFT|1|N|U|1313
9GFT|1|N|C|1314
*
9GFT|1|N|G|1338
9GFT|1|N|G|1339
9GFT|1|N|U|1340
9GFT|1|N|G|1341
9GFT|1|N|A|1342
9GFT|1|N|G|1343
*
9GFT|1|N|C|1404
9GFT|1|N|U|1405
*
9GFT|1|N|A|1597
9GFT|1|N|A|1598
9GFT|1|N|U|1599
9GFT|1|N|C|1600
9GFT|1|N|G|1601
9GFT|1|N|U|1602
9GFT|1|N|A|1603

Current chains

Chain N
23S RNA

Nearby chains

Chain g
Large ribosomal subunit protein uL23

Coloring options:


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