3D structure

PDB id
9GFT (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of the HrpA-bound E. coli disome, Class I
Experimental method
ELECTRON MICROSCOPY
Resolution
3.1 Å

Loop

Sequence
GGGC*GAC*GGAAG*UGC
Length
15 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_9GFT_032 not in the Motif Atlas
Homologous match to J4_5J7L_028
Geometric discrepancy: 0.105
The information below is about J4_5J7L_028
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_77044.4
Basepair signature
cWW-F-tHS-F-cWW-cWW-cWW-F-cWW
Number of instances in this motif group
3

Unit IDs

9GFT|1|N|G|2643
9GFT|1|N|G|2644
9GFT|1|N|G|2645
9GFT|1|N|C|2646
*
9GFT|1|N|G|2674
9GFT|1|N|A|2675
9GFT|1|N|C|2676
*
9GFT|1|N|G|2731
9GFT|1|N|G|2732
9GFT|1|N|A|2733
9GFT|1|N|A|2734
9GFT|1|N|G|2735
*
9GFT|1|N|U|2769
9GFT|1|N|G|2770
9GFT|1|N|C|2771

Current chains

Chain N
23S RNA

Nearby chains

Chain Q
50S ribosomal protein L3
Chain W
Large ribosomal subunit protein uL13
Chain X
Large ribosomal subunit protein uL14

Coloring options:


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