3D structure

PDB id
9GHA (explore in PDB, NAKB, or RNA 3D Hub)
Description
Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G and a tRNA in pe/E chimeric state (CHI)
Experimental method
ELECTRON MICROSCOPY
Resolution
2.24 Å

Loop

Sequence
AACUG*CACAG*UGAC*GUAAU
Length
19 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_9GHA_012 not in the Motif Atlas
Homologous match to J4_5J7L_025
Geometric discrepancy: 0.0319
The information below is about J4_5J7L_025
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_61477.5
Basepair signature
cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW
Number of instances in this motif group
4

Unit IDs

9GHA|1|a|A|1772
9GHA|1|a|A|1773
9GHA|1|a|C|1774
9GHA|1|a|U|1775
9GHA|1|a|G|1776
*
9GHA|1|a|C|1788
9GHA|1|a|A|1789
9GHA|1|a|C|1790
9GHA|1|a|A|1791
9GHA|1|a|G|1792
*
9GHA|1|a|U|1827
9GHA|1|a|G|1828
9GHA|1|a|A|1829
9GHA|1|a|C|1830
*
9GHA|1|a|G|1975
9GHA|1|a|U|1976
9GHA|1|a|A|1977
9GHA|1|a|A|1978
9GHA|1|a|U|1979

Current chains

Chain a
23S rRNA

Nearby chains

Chain c
50S ribosomal protein L2

Coloring options:


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