J4_9GHB_012

3D structure

PDB id

9GHB (explore in PDB, NAKB, or RNA 3D Hub)

Description

Fusidic acid-locked Escherichia coli 70S ribosome with Staphylococcus aureus EF-G in post-translocational state (POST)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.21 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GHB_012 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0295

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9GHB|1|a|A|1772
9GHB|1|a|A|1773
9GHB|1|a|C|1774
9GHB|1|a|U|1775
9GHB|1|a|G|1776
*
9GHB|1|a|C|1788
9GHB|1|a|A|1789
9GHB|1|a|C|1790
9GHB|1|a|A|1791
9GHB|1|a|G|1792
*
9GHB|1|a|U|1827
9GHB|1|a|G|1828
9GHB|1|a|A|1829
9GHB|1|a|C|1830
*
9GHB|1|a|G|1975
9GHB|1|a|U|1976
9GHB|1|a|A|1977
9GHB|1|a|A|1978
9GHB|1|a|U|1979

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2