J4_9GHD_012

3D structure

PDB id

9GHD (explore in PDB, NAKB, or RNA 3D Hub)

Description

Escherichia coli 70S ribosome in complex with Staphylococcus aureus FusB-EF-G (FusB-EF-G-70S*)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.41 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GHD_012 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0362

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9GHD|1|a|A|1772
9GHD|1|a|A|1773
9GHD|1|a|C|1774
9GHD|1|a|U|1775
9GHD|1|a|G|1776
*
9GHD|1|a|C|1788
9GHD|1|a|A|1789
9GHD|1|a|C|1790
9GHD|1|a|A|1791
9GHD|1|a|G|1792
*
9GHD|1|a|U|1827
9GHD|1|a|G|1828
9GHD|1|a|A|1829
9GHD|1|a|C|1830
*
9GHD|1|a|G|1975
9GHD|1|a|U|1976
9GHD|1|a|A|1977
9GHD|1|a|A|1978
9GHD|1|a|U|1979

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2