J4_9GHF_012

3D structure

PDB id

9GHF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the Escherichia coli 70S ribosome (FusB-70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.4 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GHF_012 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0407

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9GHF|1|a|A|1772
9GHF|1|a|A|1773
9GHF|1|a|C|1774
9GHF|1|a|U|1775
9GHF|1|a|G|1776
*
9GHF|1|a|C|1788
9GHF|1|a|A|1789
9GHF|1|a|C|1790
9GHF|1|a|A|1791
9GHF|1|a|G|1792
*
9GHF|1|a|U|1827
9GHF|1|a|G|1828
9GHF|1|a|A|1829
9GHF|1|a|C|1830
*
9GHF|1|a|G|1975
9GHF|1|a|U|1976
9GHF|1|a|A|1977
9GHF|1|a|A|1978
9GHF|1|a|U|1979

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

50S ribosomal protein L2