J4_9GHG_001

3D structure

PDB id

9GHG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the small subunit of the S. aureus 70S ribosome (FusB-Sa70S:SSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.22 Å

Loop

Sequence

CC*GAGUAC*GGAAUCUG*UAAG

Length

20 nucleotides

Bulged bases

9GHG|1|A|U|451

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GHG_001 not in the Motif Atlas

Homologous match to J4_4WF9_001

Geometric discrepancy: 0.1236

The information below is about J4_4WF9_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_94698.1

Basepair signature

cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-cWW

Number of instances in this motif group

10

Unit IDs

9GHG|1|A|C|271
9GHG|1|A|C|272
*
9GHG|1|A|G|416
9GHG|1|A|A|417
9GHG|1|A|G|418
9GHG|1|A|U|419
9GHG|1|A|A|420
9GHG|1|A|C|421
*
9GHG|1|A|G|445
9GHG|1|A|G|446
9GHG|1|A|A|447
9GHG|1|A|A|448
9GHG|1|A|U|449
9GHG|1|A|C|450
9GHG|1|A|U|451
9GHG|1|A|G|452
*
9GHG|1|A|U|467
9GHG|1|A|A|468
9GHG|1|A|A|469
9GHG|1|A|G|470

Current chains

Chain A

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L28