J4_9GHH_005

3D structure

PDB id

9GHH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Staphylococcus aureus FusB bound to the large subunit of the S. aureus 70S ribosome (FusB-Sa70S:LSU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.7 Å

Loop

Sequence

GUUUC*GGUUAG*CC*GCCCGUAC

Length

21 nucleotides

Bulged bases

9GHH|1|A|U|1378

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GHH_005 not in the Motif Atlas

Homologous match to J4_4WF9_005

Geometric discrepancy: 0.0761

The information below is about J4_4WF9_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_69051.6

Basepair signature

cWW-F-cWW-F-tHW-F-cWW-F-F-F-F-F-cWW-cWW

Number of instances in this motif group

7

Unit IDs

9GHH|1|A|G|1347
9GHH|1|A|U|1348
9GHH|1|A|U|1349
9GHH|1|A|U|1350
9GHH|1|A|C|1351
*
9GHH|1|A|G|1375
9GHH|1|A|G|1376
9GHH|1|A|U|1377
9GHH|1|A|U|1378
9GHH|1|A|A|1379
9GHH|1|A|G|1380
*
9GHH|1|A|C|1441
9GHH|1|A|C|1442
*
9GHH|1|A|G|1641
9GHH|1|A|C|1642
9GHH|1|A|C|1643
9GHH|1|A|C|1644
9GHH|1|A|G|1645
9GHH|1|A|U|1646
9GHH|1|A|A|1647
9GHH|1|A|C|1648

Current chains

Chain A

23S rRNA

Nearby chains

Chain 7

50S ribosomal protein L34

Chain W

50S ribosomal protein L23