J4_9GMO_004

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

(OMC)AAAUAU*AGG*(OMC)AUGUU*AG

Length

18 nucleotides

Bulged bases

9GMO|1|A|A|2366, 9GMO|1|A|U|2369, 9GMO|1|A|U|2828

QA status

Modified nucleotides: OMC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9GMO|1|A|OMC|2365
9GMO|1|A|A|2366
9GMO|1|A|A|2367
9GMO|1|A|A|2368
9GMO|1|A|U|2369
9GMO|1|A|A|2370
9GMO|1|A|U|2371
*
9GMO|1|A|A|2389
9GMO|1|A|G|2390
9GMO|1|A|G|2391
*
9GMO|1|A|OMC|2824
9GMO|1|A|A|2825
9GMO|1|A|U|2826
9GMO|1|A|G|2827
9GMO|1|A|U|2828
9GMO|1|A|U|2829
*
9GMO|1|A|A|3856
9GMO|1|A|G|3857

Current chains

Chain A

28S rRNA

Nearby chains

Chain J

60S ribosomal protein L17

Chain L

60S ribosomal protein L19

Chain X

60S ribosomal protein L31