J4_9GMO_009

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

GAC(PSU)G*CAAAG*UGAUU*AUGA(A2M)C

Length

21 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: PSU, A2M

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GMO_009 not in the Motif Atlas

Homologous match to J4_8C3A_006

Geometric discrepancy: 0.1122

The information below is about J4_8C3A_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

9GMO|1|A|G|3634
9GMO|1|A|A|3635
9GMO|1|A|C|3636
9GMO|1|A|PSU|3637
9GMO|1|A|G|3638
*
9GMO|1|A|C|3650
9GMO|1|A|A|3651
9GMO|1|A|A|3652
9GMO|1|A|A|3653
9GMO|1|A|G|3654
*
9GMO|1|A|U|3690
9GMO|1|A|G|3691
9GMO|1|A|A|3692
9GMO|1|A|U|3693
9GMO|1|A|U|3694
*
9GMO|1|A|A|3821
9GMO|1|A|U|3822
9GMO|1|A|G|3823
9GMO|1|A|A|3824
9GMO|1|A|A2M|3825
9GMO|1|A|C|3826

Current chains

Chain A

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L8

Chain j

60S ribosomal protein L37a