J4_9GMO_010

3D structure

PDB id

9GMO (explore in PDB, NAKB, or RNA 3D Hub)

Description

eIF6-bound pre-60S large ribosomal subunit incorporating mutant uL16

Experimental method

ELECTRON MICROSCOPY

Resolution

2.59 Å

Loop

Sequence

CUG*CG*CUUAAGGUAG*UGAA(UY1)G

Length

21 nucleotides

Bulged bases

9GMO|1|A|UY1|3818

QA status

Modified nucleotides: UY1

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GMO_010 not in the Motif Atlas

Homologous match to J4_8P9A_018

Geometric discrepancy: 0.1512

The information below is about J4_8P9A_018

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_42306.1

Basepair signature

cWW-tSS-cSS-cWH-cWW-tWH-tHS-cWW-cWW-tWW-F-cSH-F-F

Number of instances in this motif group

5

Unit IDs

9GMO|1|A|C|3696
9GMO|1|A|U|3697
9GMO|1|A|G|3698
*
9GMO|1|A|C|3752
9GMO|1|A|G|3753
*
9GMO|1|A|C|3771
9GMO|1|A|U|3772
9GMO|1|A|U|3773
9GMO|1|A|A|3774
9GMO|1|A|A|3775
9GMO|1|A|G|3776
9GMO|1|A|G|3777
9GMO|1|A|U|3778
9GMO|1|A|A|3779
9GMO|1|A|G|3780
*
9GMO|1|A|U|3814
9GMO|1|A|G|3815
9GMO|1|A|A|3816
9GMO|1|A|A|3817
9GMO|1|A|UY1|3818
9GMO|1|A|G|3819

Current chains

Chain A

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L8