J4_9GXX_013

3D structure

PDB id

9GXX (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome with doublet-decoding tRNASer3 bound to A-site GCA codon

Experimental method

ELECTRON MICROSCOPY

Resolution

2.61 Å

Loop

Sequence

AACUG*CACAG*UGAC*GUAAU

Length

19 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9GXX_013 not in the Motif Atlas

Homologous match to J4_5J7L_025

Geometric discrepancy: 0.0525

The information below is about J4_5J7L_025

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_61477.5

Basepair signature

cWW-tSW-F-tHS-tHS-F-cWW-cWW-F-tHS-cWW

Number of instances in this motif group

4

Unit IDs

9GXX|1|a|A|1772
9GXX|1|a|A|1773
9GXX|1|a|C|1774
9GXX|1|a|U|1775
9GXX|1|a|G|1776
*
9GXX|1|a|C|1788
9GXX|1|a|A|1789
9GXX|1|a|C|1790
9GXX|1|a|A|1791
9GXX|1|a|G|1792
*
9GXX|1|a|U|1827
9GXX|1|a|G|1828
9GXX|1|a|A|1829
9GXX|1|a|C|1830
*
9GXX|1|a|G|1975
9GXX|1|a|U|1976
9GXX|1|a|A|1977
9GXX|1|a|A|1978
9GXX|1|a|U|1979

Current chains

Chain a

23S rRNA

Nearby chains

Chain c

Large ribosomal subunit protein uL2