J4_9H3L_007

3D structure

PDB id

9H3L (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C_(L29)-/(L22)-

Experimental method

ELECTRON MICROSCOPY

Resolution

5.84 Å

Loop

Sequence

GGGC*GAC*GGAAG*UGC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9H3L_007 not in the Motif Atlas

Homologous match to J4_5J7L_028

Geometric discrepancy: 0.2713

The information below is about J4_5J7L_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_77044.4

Basepair signature

cWW-F-tHS-F-cWW-cWW-cWW-F-cWW

Number of instances in this motif group

3

Unit IDs

9H3L|1|A|G|2643
9H3L|1|A|G|2644
9H3L|1|A|G|2645
9H3L|1|A|C|2646
*
9H3L|1|A|G|2674
9H3L|1|A|A|2675
9H3L|1|A|C|2676
*
9H3L|1|A|G|2731
9H3L|1|A|G|2732
9H3L|1|A|A|2733
9H3L|1|A|A|2734
9H3L|1|A|G|2735
*
9H3L|1|A|U|2769
9H3L|1|A|G|2770
9H3L|1|A|C|2771

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain J

Large ribosomal subunit protein uL13

Chain K

Large ribosomal subunit protein uL14