3D structure

PDB id
9H3Q (explore in PDB, NAKB, or RNA 3D Hub)
Description
50S subunit precursor C-CP_YjgA_(L22)-~H61
Experimental method
ELECTRON MICROSCOPY
Resolution
4.02 Å

Loop

Sequence
CC*GAGUAG*UGAAUAUG*CAAG
Length
20 nucleotides
Bulged bases
9H3Q|1|A|U|403, 9H3Q|1|A|U|405
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
J4_9H3Q_001 not in the Motif Atlas
Homologous match to J4_5J7L_018
Geometric discrepancy: 0.215
The information below is about J4_5J7L_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
J4_45801.6
Basepair signature
cWW-cWW-cSS-F-tHH-cWW-cSH-tWH-F-tHS-F-cWW
Number of instances in this motif group
7

Unit IDs

9H3Q|1|A|C|268
9H3Q|1|A|C|269
*
9H3Q|1|A|G|370
9H3Q|1|A|A|371
9H3Q|1|A|G|372
9H3Q|1|A|U|373
9H3Q|1|A|A|374
9H3Q|1|A|G|375
*
9H3Q|1|A|U|399
9H3Q|1|A|G|400
9H3Q|1|A|A|401
9H3Q|1|A|A|402
9H3Q|1|A|U|403
9H3Q|1|A|A|404
9H3Q|1|A|U|405
9H3Q|1|A|G|406
*
9H3Q|1|A|C|421
9H3Q|1|A|A|422
9H3Q|1|A|A|423
9H3Q|1|A|G|424

Current chains

Chain A
23S ribosomal RNA

Nearby chains

Chain H
Large ribosomal subunit protein bL9
Chain X
Large ribosomal subunit protein bL28

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.3555 s