J4_9H3S_007

3D structure

PDB id

9H3S (explore in PDB, NAKB, or RNA 3D Hub)

Description

50S subunit precursor C-CP_YjgA_L22

Experimental method

ELECTRON MICROSCOPY

Resolution

4.16 Å

Loop

Sequence

CGAAG*UUGAC*GGU*AGG

Length

16 nucleotides

Bulged bases

9H3S|1|A|A|2288

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J4_9H3S_007 not in the Motif Atlas

Homologous match to J4_5J7L_027

Geometric discrepancy: 0.1573

The information below is about J4_5J7L_027

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J4_04930.6

Basepair signature

cWW-F-F-tWW-tHH-cWW-cWW-cHW-cWW

Number of instances in this motif group

7

Unit IDs

9H3S|1|A|C|2285
9H3S|1|A|G|2286
9H3S|1|A|A|2287
9H3S|1|A|A|2288
9H3S|1|A|G|2289
*
9H3S|1|A|U|2343
9H3S|1|A|U|2344
9H3S|1|A|G|2345
9H3S|1|A|A|2346
9H3S|1|A|C|2347
*
9H3S|1|A|G|2370
9H3S|1|A|G|2371
9H3S|1|A|U|2372
*
9H3S|1|A|A|2381
9H3S|1|A|G|2382
9H3S|1|A|G|2383

Current chains

Chain A

23S ribosomal RNA

Nearby chains

Chain O

Large ribosomal subunit protein uL18

Chain W

Large ribosomal subunit protein bL27